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  Gints
Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.

  limmaGUI
A graphical user interface for linear modelling of cDNA and oligonucleotide microarray data to identify differentially expressed genes.

  Metalifesocieties
Makes available various bioinformatics algorithms, which perform all essential tasks in sequence analysis and sequence-based predictions.

  NCBI BLAST
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.

  Premier Biosoft International
Developers of software for real time PCR primer design, TaqMan, molecular beacons, DNA microarray analysis, drawing restriction plasmid maps, gateway cloning experiments, protein interaction network and functional genomics.

  STRING
Search for Tandem Repeats IN Genomes -- Includes C source code and examples.

  XDigitize
A visualization software system for evaluation of hybridisation experiments.

  High Throughput Screening Tools
Analytical tools and SQL scripts that solve common problems in drug discovery.

  Linux Software Encyclopedia - Bioinformatics
Links to Bioinformatics software for Linux. From the Linux Software Encyclopedia.

  Meta-MEME v2.0.1
Software toolkit for building and using motif-based hidden Markov models of DNA and proteins - from the University of California-San Diego.

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