• Virtual Genome Center
Online computational resources for PCR primer selection, similarity searching- from the Univ. of Minnesota.
• WU-BLAST Archives
Sensitive, selective, and rapid sequence database searching with gapped alignments - from Washington Univ.-St.Louis.
• Vista Tools
Multiple sequence alignment server and whole genome alignment database.
• YMF - DNA Motif Finding Program
Finds novel transcription factor binding sites by searching for over-represented (most significant motifs) motifs in DNA sequences.
• WatCut
Watcut is an on-line tool that offers three functions: 1. restriction mapping, 2. silent mutation scanning, and 3. scanning for amplification-created restriction sites that facilitate detection of SNP by PCR.
• Verbumculus Genetic Sequence Analyzer
An interesting tool to discover and visualize over- or under-represented words in genetic sequences. Requires Java support in browser. Also available as a downloadable program.
• Webcutter 2.0
Free, online software for restriction mapping nucleotide sequences.
• GeneStream II
Sequence comparision and search programs, including the rigorous Smith-Waterman algorithm (in FastA and Ssearch) - from the IGH, Montpellier FR.
• GenomeSURF
Colorful visualization of Sequence Frequency. Includes Human and Mouse Genomic Sequences. Evaluate uniqueness of graphically.
• Human Ageing Genomic Resources
A collection of databases and tools designed to help researchers understand the genetics of human ageing.
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