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  DARWIN
An interactive tool for peptide and nucleotide sequence analysis

  GDE for Linux
An integrated linux environment for bioinformatics and evolutionary analysis based on the Genetic Data Environment (GDE). Contains binaries for Linux and Mac OS X, documentation, screenshots, references, and organism specific interfaces.

  WatCut
Watcut is an on-line tool that offers three functions: 1. restriction mapping, 2. silent mutation scanning, and 3. scanning for amplification-created restriction sites that facilitate detection of SNP by PCR.

  Bioinformatics: Publications
Bioinformatics aims to publish high quality, peer-reviewed, original scientific papers and excellent review articles in the fields of computational molecular biology, biological databases and genome bioinformatics.

  Journal of Biomedical Infomatics
Provides recent information concerning the use of computers in biomedicine.

  GeneMatcher
Access to Smith-Waterman-based FDF sequence comparison program, with excellent explanation of when to use it vs. BLAST - from the Univ. of Lausanne, FR.

  Geneva Bioinformatics (GeneBio) S.A.
GeneBio provides proteomics software tools and databases including SWISS-PROT, PROSITE, SWISS-2DPAGE and Melanie. We also offer a secure version of ExPASy molecular biology web server.

  GRIMM/MGR
A tool for constructing phylogenies based on gene order for unichromosomal and multichromosomal genomes

  IBM Bioinformatics Group - Tools & Content
Several genomics and proteomics tools, including multiple alignments, gene expression analysis, tandem repeat and motif discovery.

  JustBio: Online Tool Set
A Suite of Online tools for analysis of DNA/RNA, Proteins, and Arrays.

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